Get summary of input multi-fasta file like mean length, median length, GC content etc
fa_summary(fasta_file)
fasta_file | Either a path or a connection to multi-fasta file. The input sequence file should have extention .fa or .fasta In the sequence header: only string before first space and/or first colon (:) will be considered for futher processes. **Important consideration when header have big names. |
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A summary table
if (FALSE) { ref_fasta <- system.file("exdata", "Sc_nucl_R64-2-1.fasta", package = "fastaR") fastaR::fa_summary(fasta_file=ref_fasta) }