Fasta file summary

Get summary of input multi-fasta file like mean length, median length, GC content etc

fa_summary(fasta_file)

Arguments

fasta_file	Either a path or a connection to multi-fasta file. The input sequence file should have extention .fa or .fasta In the sequence header: only string before first space and/or first colon (:) will be considered for futher processes. **Important consideration when header have big names.

Value

A summary table

Examples

if (FALSE) {

 ref_fasta <- system.file("exdata", "Sc_nucl_R64-2-1.fasta", package = "fastaR")
 fastaR::fa_summary(fasta_file=ref_fasta)
}