heatmap of gene expressions by class — ggplot_heatmap • FungalSporeAnalysis

Heatmap of genes expression value categorized by classes

ggplot_heatmap(input_data, threshold = FALSE, output_name = "Sample")

Arguments

input_data	A tibble, with four columns. First column name should be `genes` and second column name should be `class`. Other columns can have unique names to plot.
threshold	Logical, to set maximum limit of the color key.`default:FALSE`. If `TRUE` on-run threshold value should be provided.
output_name	A character vector, containing name of the output plot.`default:Sample`

Value

heatmap of expression of given genes categorized by class and output image file of same.

Examples

if (FALSE) {

dat <- readr::read_delim(system.file("extdata/genesets/an_spore_hypha_specificgenes.txt" , package = "FungalSporeAnalysis"), delim="\t", col_names = TRUE)
input_data <- dat %>% dplyr::filter(class=="spore_maturation")
ggplot_heatmap(input_data ,threshold = TRUE, output_name = "plots/An_spores_maturation_genes_exprsn")

}